Galaxy | ProteoRE | Published Workflow | Glioma biomarker identification

Glioma biomarker identification

Annotation:

Step	Annotation
Step 1: Get expression profiles Enter your IDs (Ensembl gene ID only; e.g. ENSG00000163631) Input file containing your IDs file select at runtime Does file contain header? False Column number of IDs to map c1 Human Protein Atlas (normal or tumor tissue) Human Tumor Tissue Tumor tissue HPA version 18.1 /home/proteore/galaxy/tool-data/protein_atlas/HPA_pathology_17-06-2021.tsv Select cancer tissue(s) Glioma Keep IDs not found in HPA? True
Step 2: Filter by keywords and/or numerical value Input file Output dataset 'hpa_output' from step 1 Does file contain header? True Operation Discard Select an operator to combine your filters (if more than one) OR Filter by keywords Filter by keywords 1 Column number on which to apply the filter c8 Search for exact match? True Enter keywords copy/paste Copy/paste keywords to find (keep or discard) NA Filter by numerical values Filter by range of numerical values Sort by column ? False
Step 3: Get MS/MS observations in tissue/fluid Enter your IDs (UniProt Accession number only) Input file containing your IDs Select your file Output dataset 'kept_lines' from step 2 Does file contain header? True Column of IDs c1 Proteomics dataset (biological sample) tool-data/Human_CSF_2014-09.tsv

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anya

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